We were having issues with the Comment and Link count's not showing up. After going through the SPROCS I currently have I noticed that no where was the main table which these values we're pulled from updated. So I added a trigger to update these tables as a temp fix. I am assuming I am running some outdated SPROC's. Scott has told me he is having a new version soon, which I'm really excited about, so all these smaller issues should be fixed with that!
Thanks for all of your patience!